About CeCaFDB
CeCaFDB is a general-purpose,freely available and curated
fluxomics database.It collects and stores quantitative flux
results of central carbon metabolism among various organisms
explored by 13C metabolic flux analysis. The database encompasses
581
cases of fluxomics result among
36
organisms. In addition to its comprehensive literature-derived
data, the CeCaFDB supports a common text search among the data and
interactive visualization of curated flux distributions with
compartmentation information based on the Cytoscape Web API, which
facilitates data interpretation. The CeCaFDB offers four modules
to calculate a similarity score or to perform an alignment between
the flux distributions. Based on these modules,CeCaFDB supports
flux map query task against all the curate flux map data through
similarity comparison after they have been submitted to CeCaFDB.
It is intended to be used as a platform for the display, comparison and distribution of fluxomics experimental result.We attempt to cover as more flux distribution results as possible. New flux data are added monthly after they appeared publicly. Please let us know if some research have escaped our attention, its our duty to add them !
It is intended to be used as a platform for the display, comparison and distribution of fluxomics experimental result.We attempt to cover as more flux distribution results as possible. New flux data are added monthly after they appeared publicly. Please let us know if some research have escaped our attention, its our duty to add them !
Statistics | |||||||||||||||||||||||||||||||||||||
Species | Total | Actinobacillus succinogenes | Agrobacterium tumefaciens | Arthrobacter sp | Ashbya gossypii | Aspergillus nidulans | Aspergillus niger | Bacillus megaterium | Bacillus subtilis | Basfia succiniciproducens | Chlorobaculum tepidum | Corynebacterium glutamicum | Desulfovibrio vulgaris | Escherichia coli | Geobacillus thermoglucosidasius | Geobacter metallireducens | Gluconacetobacter xylinus | Homo sapiens | Methylobacterium extorquens AM1 | Mycobacterium tuberculosis | Penicillium chrysogenum | Pichia pastoris | Pseudomonas aeruginosa | Pseudomonas fluorescens | Pseudomonas putida | Rhodobacter sphaeroides | Rhodopseudomonas palustris | Saccharomyces cerevisiae | Scheffersomyces stipitis | Schizosaccharomyces pombe | Shewanella oneidensis | Shewanella SPP. | Sinorhizobium meliloti | Synechocystis SP. | Thermus thermophilus | Xanthomonas campestris | Zymomonas mobilis |
Reference | 118 | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 11 | 1 | 1 | 22 | 1 | 31 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 3 | 1 | 1 | 2 | 1 | 1 | 14 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Condition | 581 | 5 | 8 | 3 | 2 | 6 | 4 | 11 | 46 | 1 | 2 | 57 | 1 | 297 | 2 | 2 | 3 | 3 | 2 | 5 | 2 | 7 | 2 | 1 | 3 | 1 | 2 | 76 | 4 | 2 | 3 | 11 | 1 | 1 | 1 | 1 | 3 |
Flux graph | 581 | 5 | 8 | 3 | 2 | 6 | 4 | 11 | 46 | 1 | 2 | 57 | 1 | 297 | 2 | 2 | 3 | 3 | 2 | 5 | 2 | 7 | 2 | 1 | 3 | 1 | 2 | 76 | 4 | 2 | 3 | 11 | 1 | 1 | 1 | 1 | 3 |