Biotechnol Bioeng. 2009 Mar;102(4):1161-9. Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism. Tang YJ, Martin HG, Dehal PS, et al.
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ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 44 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 3 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 45 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 4 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 44 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 2 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 67 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 1 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 53 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 4 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 56 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 2 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 53 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 4 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 44 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 3 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 48 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 2 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 93 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 7 | R02736+R01528 |
ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
NADPH production rate Maximum | 86 | R02736+R01528+R00267+R00214 |
NADPH production rate Minium | 1 | R02736+R01528 |
Growth Condition | |
Strains | Shewanella MR1 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.23/h |
Case-specific description | The flux of central carbon metabolism in Shewanella MR1. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella MR4 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.28/h |
Case-specific description | The flux of central carbon metabolism in Shewanella MR4. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella MR7 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.29/h |
Case-specific description | The flux of central carbon metabolism in Shewanella MR7. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella SB |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.24/h |
Case-specific description | The flux of central carbon metabolism in Shewanella SB. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella CN |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.26/h |
Case-specific description | The flux of central carbon metabolism in Shewanella CN. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella W3 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.27/h |
Case-specific description | The flux of central carbon metabolism in Shewanella W3. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella ANA |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.28/h |
Case-specific description | The flux of central carbon metabolism in Shewanella ANA. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella PV4 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | 0.24/h |
Case-specific description | The flux of central carbon metabolism in Shewanella PV4. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | E.coli W3110 |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | |
Case-specific description | The flux of central carbon metabolism in Shewanella E.coli W3110. Although the tested Shewanella species had slightly different growth rates and produced different amounts of acetate and pyruvate during early exponential growth,the relative intracellular metabolic flux distributions were remarkably similar. |
Growth Condition | |
Strains | Shewanella MR1 late |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | |
Case-specific description | The isotopomer data from proteinogenic amino acids in the late phase biomass. |
Growth Condition | |
Strains | E.coli W3110 late |
Genotype | |
Culture medium | The modified MR-1 defined medium. |
Carbon source | Lactate. |
Growth rate | |
Case-specific description | The isotopomer data from proteinogenic amino acids in the late phase biomass. |
Specific Rate | (mmol g-1 h-1) |
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Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |
Specific Rate | (mmol g-1 h-1) |