BMC Syst Biol. 2010 Feb;4:12. Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates. Fendt SM, Sauer U.
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| ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
| ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
| NADPH production rate Maximum | 16 | R02736+R01528+R00267+R00214 |
| NADPH production rate Minium | 14 | R02736+R01528 |
| ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
| ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
| NADPH production rate Maximum | 19 | R02736+R01528+R00267+R00214 |
| NADPH production rate Minium | 16 | R02736+R01528 |
| ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
| ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
| NADPH production rate Maximum | 40 | R02736+R01528+R00267+R00214 |
| NADPH production rate Minium | 28 | R02736+R01528 |
| ATP production rate Maximum | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R00267+2.5*R08549-R00405+1.5*R00402+2.5*R00342 +2.5*R00214 |
| ATP production rate Minium | N/A | -R01786-R04779+2.5*R01061+R01512+R00200+2.5*R00209 +2.5*R08549-R00405+1.5*R00402+2.5*R00342 |
| NADPH production rate Maximum | 21 | R02736+R01528+R00267+R00214 |
| NADPH production rate Minium | 4 | R02736+R01528 |
| Growth Condition | |
| Strains | Saccharomyces cerevisiae FY4 |
| Genotype | FY4 MATa FY4 |
| Culture medium | All liquid cultivations were carried out using minimal medium as described in Blank and Sauer (2004). |
| Carbon source | Glucose |
| Growth rate | 0.33/h |
| Case-specific description | In vivo fluxes normalized to substrate uptake rate(16.3mmol/g/h) in exponentially growing batch cultures on glucose. Glucose fluxes were calculated from separately performed 1-13C and U-13C labeled substrates. |
| Growth Condition | |
| Strains | Saccharomyces cerevisiae FY4 |
| Genotype | FY4 MATa FY4 |
| Culture medium | All liquid cultivations were carried out using minimal medium as described in Blank and Sauer (2004) |
| Carbon source | Mannose |
| Growth rate | 0.32/h |
| Case-specific description | In vivo fluxes normalized to substrate uptake rate (12.8mmol/g/h) in exponentially growing batch cultures on mannose. Mannose fluxes were calculated only from U-13C labeled substrates. |
| Growth Condition | |
| Strains | Saccharomyces cerevisiae FY4 |
| Genotype | FY4 MATa FY4 |
| Culture medium | All liquid cultivations were carried out using minimal medium as described in Blank and Sauer (2004) |
| Carbon source | Galactose |
| Growth rate | 0.20/h |
| Case-specific description | In vivo fluxes normalized to substrate uptake rate (4.5mmol/g/h) in exponentially growing batch cultures on galactose. Galactose fluxes were calculated from separately performed 1-13C and U-13C labeled substrates. |
| Growth Condition | |
| Strains | Saccharomyces cerevisiae FY4 |
| Genotype | FY4 MATa FY4 |
| Culture medium | All liquid cultivations were carried out using minimal medium as described in Blank and Sauer (2004) |
| Carbon source | Pyruvate |
| Growth rate | 0.10/h |
| Case-specific description | In vivo fluxes normalized to substrate uptake rate (2.5mmol/g/h) in exponentially growing batch cultures on pyruvate. Pyruvate fluxes were calculated only from U-13C labeled substrates. |
| Specific Rate | (mmol g-1 h-1) |
| Glucose | -16.3 |
| Mannose | N/A |
| Galactose | N/A |
| Pyruvate | N/A |
| Specific Rate | (mmol g-1 h-1) |
| Glucose | N/A |
| Mannose | -12.8 |
| Galactose | N/A |
| Pyruvate | N/A |
| Specific Rate | (mmol g-1 h-1) |
| Glucose | N/A |
| Mannose | N/A |
| Galactose | -4.5 |
| Pyruvate | N/A |
| Specific Rate | (mmol g-1 h-1) |
| Glucose | N/A |
| Mannose | N/A |
| Galactose | N/A |
| Pyruvate | -2.5 |